AIRR Workshop

Sign-up

If you want to participate in the hands-on section of the workshop we will need to create a training account on Dawn for you. Please supply your name and email address on the following AIRR Workshop Registration Form:

Sign-ups are limited to the first 60.

Please complete the form by 17:00 Monday 2 Sep.

Warning

If you do not pre-register you will not be able to access the system on the day.

Logging in

1. You should have received an email from support@hpc.cam.ac.uk with the details of your training account. It contains a ONE TIME link to collect the password. You will need the passphrase which is also contained in the email. Retrieve your password.
2. Navigate to login-web and use your account details to log in.
3. The first time you log in, you will be prompted to set up MultiFactor Authentication (MFA). Follow the steps and consult the MultiFactor Authentication (MFA) page for further information.
4. Once you have set this up successfully, you should now reach the login-web dashboard. Please ask one of the assistants if you are having issues.

Starting the Jupyter Notebook

1. Select the Interactive Apps button from the top bar and then click Jupyter Notebook.

2. Enter the following details

   Project Account	training-cpu
   Partition	icelake
   Reservation	rsecon-icl
   Number of hours	2
   Number of cores	5
   Number of GPUs	0
   Modules	jupyterlab/3 default-dawn
   Number of nodes	1

3. Click Launch and wait for the job to start. When it is ready, click the Connect to Jupyter button.

Setting things up

1. Select New from near the top right and then Terminal.

2. A new tab will open with a terminal. Execute the following command:

   ~/rds/rds-rsecon/RSECon24-AIRR-Workshop/setup-workshop.sh
   

   To paste into the terminal use Ctrl + Shift + V. This command will copy some files from the shared storage to your directories so may take some time.

3. Go back to the Jupyter Home tab.

4. Open Notebook.ipynb.

5. We will go through the notebook together.